Quantitative trait loci and candidate gene mapping of bud set and bud flush in populus.
Identifieur interne : 004776 ( Main/Exploration ); précédent : 004775; suivant : 004777Quantitative trait loci and candidate gene mapping of bud set and bud flush in populus.
Auteurs : B E Frewen [États-Unis] ; T H Chen ; G T Howe ; J. Davis ; A. Rohde ; W. Boerjan ; H D BradshawSource :
- Genetics [ 0016-6731 ] ; 2000.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical : DNA Primers.
- genetics : Trees.
- Base Sequence, Chromosome Mapping, Phenotype, Quantitative Trait, Heritable.
Abstract
The genetic control of bud phenology in hybrid poplar was studied by mapping quantitative trait loci (QTL) affecting the timing of autumn bud set and spring bud flush. The founders of the mapping pedigree were collected from widely separated latitudes to maximize segregating variation for dormancy-related traits in the F(2) generation-the female Populus trichocarpa parent is from Washington State (48 degrees N) and the male P. deltoides parent is from Texas (31 degrees N). Bud set and bud flush timing were measured on the F(2) generation in a replicated clonal field trial. Using a linkage map constructed of AFLP and microsatellite markers, three QTL controlling bud set and six QTL controlling bud flush were detected. Additionally, five candidate genes believed to be involved in perception of photoperiod (PHYB1, PHYB2) or transduction of abscisic acid response signals (ABI1B, ABI1D, and ABI3) were placed on the QTL map. PHYB2 and ABI1B were found to be coincident with QTL affecting bud set and bud flush.
PubMed: 10655234
PubMed Central: PMC1460936
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Quantitative trait loci and candidate gene mapping of bud set and bud flush in populus.</title><author><name sortKey="Frewen, B E" sort="Frewen, B E" uniqKey="Frewen B" first="B E" last="Frewen">B E Frewen</name><affiliation wicri:level="4"><nlm:affiliation>College of Forest Resources, University of Washington, Seattle, Washington 98195, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>College of Forest Resources, University of Washington, Seattle, Washington 98195</wicri:regionArea><orgName type="university">Université de Washington</orgName><placeName><settlement type="city">Seattle</settlement><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Chen, T H" sort="Chen, T H" uniqKey="Chen T" first="T H" last="Chen">T H Chen</name></author><author><name sortKey="Howe, G T" sort="Howe, G T" uniqKey="Howe G" first="G T" last="Howe">G T Howe</name></author><author><name sortKey="Davis, J" sort="Davis, J" uniqKey="Davis J" first="J" last="Davis">J. Davis</name></author><author><name sortKey="Rohde, A" sort="Rohde, A" uniqKey="Rohde A" first="A" last="Rohde">A. Rohde</name></author><author><name sortKey="Boerjan, W" sort="Boerjan, W" uniqKey="Boerjan W" first="W" last="Boerjan">W. Boerjan</name></author><author><name sortKey="Bradshaw, H D" sort="Bradshaw, H D" uniqKey="Bradshaw H" first="H D" last="Bradshaw">H D Bradshaw</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2000">2000</date><idno type="RBID">pubmed:10655234</idno><idno type="pmid">10655234</idno><idno type="pmc">PMC1460936</idno><idno type="wicri:Area/Main/Corpus">004879</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">004879</idno><idno type="wicri:Area/Main/Curation">004879</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">004879</idno><idno type="wicri:Area/Main/Exploration">004879</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Quantitative trait loci and candidate gene mapping of bud set and bud flush in populus.</title><author><name sortKey="Frewen, B E" sort="Frewen, B E" uniqKey="Frewen B" first="B E" last="Frewen">B E Frewen</name><affiliation wicri:level="4"><nlm:affiliation>College of Forest Resources, University of Washington, Seattle, Washington 98195, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>College of Forest Resources, University of Washington, Seattle, Washington 98195</wicri:regionArea><orgName type="university">Université de Washington</orgName><placeName><settlement type="city">Seattle</settlement><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Chen, T H" sort="Chen, T H" uniqKey="Chen T" first="T H" last="Chen">T H Chen</name></author><author><name sortKey="Howe, G T" sort="Howe, G T" uniqKey="Howe G" first="G T" last="Howe">G T Howe</name></author><author><name sortKey="Davis, J" sort="Davis, J" uniqKey="Davis J" first="J" last="Davis">J. Davis</name></author><author><name sortKey="Rohde, A" sort="Rohde, A" uniqKey="Rohde A" first="A" last="Rohde">A. Rohde</name></author><author><name sortKey="Boerjan, W" sort="Boerjan, W" uniqKey="Boerjan W" first="W" last="Boerjan">W. Boerjan</name></author><author><name sortKey="Bradshaw, H D" sort="Bradshaw, H D" uniqKey="Bradshaw H" first="H D" last="Bradshaw">H D Bradshaw</name></author></analytic><series><title level="j">Genetics</title><idno type="ISSN">0016-6731</idno><imprint><date when="2000" type="published">2000</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>Chromosome Mapping (MeSH)</term><term>DNA Primers (MeSH)</term><term>Phenotype (MeSH)</term><term>Quantitative Trait, Heritable (MeSH)</term><term>Trees (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Amorces ADN (MeSH)</term><term>Arbres (génétique)</term><term>Caractère quantitatif héréditaire (MeSH)</term><term>Cartographie chromosomique (MeSH)</term><term>Phénotype (MeSH)</term><term>Séquence nucléotidique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA Primers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Trees</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arbres</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Chromosome Mapping</term><term>Phenotype</term><term>Quantitative Trait, Heritable</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Amorces ADN</term><term>Caractère quantitatif héréditaire</term><term>Cartographie chromosomique</term><term>Phénotype</term><term>Séquence nucléotidique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The genetic control of bud phenology in hybrid poplar was studied by mapping quantitative trait loci (QTL) affecting the timing of autumn bud set and spring bud flush. The founders of the mapping pedigree were collected from widely separated latitudes to maximize segregating variation for dormancy-related traits in the F(2) generation-the female Populus trichocarpa parent is from Washington State (48 degrees N) and the male P. deltoides parent is from Texas (31 degrees N). Bud set and bud flush timing were measured on the F(2) generation in a replicated clonal field trial. Using a linkage map constructed of AFLP and microsatellite markers, three QTL controlling bud set and six QTL controlling bud flush were detected. Additionally, five candidate genes believed to be involved in perception of photoperiod (PHYB1, PHYB2) or transduction of abscisic acid response signals (ABI1B, ABI1D, and ABI3) were placed on the QTL map. PHYB2 and ABI1B were found to be coincident with QTL affecting bud set and bud flush.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">10655234</PMID><DateCompleted><Year>2000</Year><Month>03</Month><Day>14</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0016-6731</ISSN><JournalIssue CitedMedium="Print"><Volume>154</Volume><Issue>2</Issue><PubDate><Year>2000</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Genetics</Title><ISOAbbreviation>Genetics</ISOAbbreviation></Journal><ArticleTitle>Quantitative trait loci and candidate gene mapping of bud set and bud flush in populus.</ArticleTitle><Pagination><MedlinePgn>837-45</MedlinePgn></Pagination><Abstract><AbstractText>The genetic control of bud phenology in hybrid poplar was studied by mapping quantitative trait loci (QTL) affecting the timing of autumn bud set and spring bud flush. The founders of the mapping pedigree were collected from widely separated latitudes to maximize segregating variation for dormancy-related traits in the F(2) generation-the female Populus trichocarpa parent is from Washington State (48 degrees N) and the male P. deltoides parent is from Texas (31 degrees N). Bud set and bud flush timing were measured on the F(2) generation in a replicated clonal field trial. Using a linkage map constructed of AFLP and microsatellite markers, three QTL controlling bud set and six QTL controlling bud flush were detected. Additionally, five candidate genes believed to be involved in perception of photoperiod (PHYB1, PHYB2) or transduction of abscisic acid response signals (ABI1B, ABI1D, and ABI3) were placed on the QTL map. PHYB2 and ABI1B were found to be coincident with QTL affecting bud set and bud flush.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Frewen</LastName><ForeName>B E</ForeName><Initials>BE</Initials><AffiliationInfo><Affiliation>College of Forest Resources, University of Washington, Seattle, Washington 98195, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>T H</ForeName><Initials>TH</Initials></Author><Author ValidYN="Y"><LastName>Howe</LastName><ForeName>G T</ForeName><Initials>GT</Initials></Author><Author ValidYN="Y"><LastName>Davis</LastName><ForeName>J</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Rohde</LastName><ForeName>A</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Boerjan</LastName><ForeName>W</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Bradshaw</LastName><ForeName>H D</ForeName><Initials>HD</Initials><Suffix>Jr</Suffix></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Genetics</MedlineTA><NlmUniqueID>0374636</NlmUniqueID><ISSNLinking>0016-6731</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D017931">DNA Primers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017931" MajorTopicYN="N">DNA Primers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019655" MajorTopicYN="Y">Quantitative Trait, Heritable</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2000</Year><Month>2</Month><Day>3</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2000</Year><Month>3</Month><Day>18</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2000</Year><Month>2</Month><Day>3</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">10655234</ArticleId><ArticleId IdType="pmc">PMC1460936</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Genomics. 1987 Oct;1(2):174-81</Citation><ArticleIdList><ArticleId IdType="pubmed">3692487</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 1992 Oct;4(10):1251-61</Citation><ArticleIdList><ArticleId IdType="pubmed">1359917</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 1994 Jun 3;264(5164):1448-52</Citation><ArticleIdList><ArticleId IdType="pubmed">7910981</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 1994 Jun 3;264(5164):1452-5</Citation><ArticleIdList><ArticleId IdType="pubmed">8197457</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1994 Apr;136(4):1457-68</Citation><ArticleIdList><ArticleId IdType="pubmed">8013918</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 1998 Feb;15(2):160-75</Citation><ArticleIdList><ArticleId IdType="pubmed">9491613</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1995 Feb;139(2):963-73</Citation><ArticleIdList><ArticleId IdType="pubmed">7713445</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 1995 May 5;268(5211):675-80</Citation><ArticleIdList><ArticleId IdType="pubmed">7732376</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1995 Nov 11;23(21):4407-14</Citation><ArticleIdList><ArticleId IdType="pubmed">7501463</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 1997 May;9(5):759-71</Citation><ArticleIdList><ArticleId IdType="pubmed">9165752</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1994 Nov;138(3):963-71</Citation><ArticleIdList><ArticleId IdType="pubmed">7851788</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Washington (État)</li></region><settlement><li>Seattle</li></settlement><orgName><li>Université de Washington</li></orgName></list><tree><noCountry><name sortKey="Boerjan, W" sort="Boerjan, W" uniqKey="Boerjan W" first="W" last="Boerjan">W. Boerjan</name><name sortKey="Bradshaw, H D" sort="Bradshaw, H D" uniqKey="Bradshaw H" first="H D" last="Bradshaw">H D Bradshaw</name><name sortKey="Chen, T H" sort="Chen, T H" uniqKey="Chen T" first="T H" last="Chen">T H Chen</name><name sortKey="Davis, J" sort="Davis, J" uniqKey="Davis J" first="J" last="Davis">J. Davis</name><name sortKey="Howe, G T" sort="Howe, G T" uniqKey="Howe G" first="G T" last="Howe">G T Howe</name><name sortKey="Rohde, A" sort="Rohde, A" uniqKey="Rohde A" first="A" last="Rohde">A. Rohde</name></noCountry><country name="États-Unis"><region name="Washington (État)"><name sortKey="Frewen, B E" sort="Frewen, B E" uniqKey="Frewen B" first="B E" last="Frewen">B E Frewen</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 004776 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 004776 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:10655234
|texte= Quantitative trait loci and candidate gene mapping of bud set and bud flush in populus.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:10655234" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |